Index

B D G M O R T _
All Classes and Interfaces|All Packages

B

buildCommandLine(FilePath) - Method in class org.biouno.r.R

D

DescriptorImpl() - Constructor for class org.biouno.r.R.DescriptorImpl

DescriptorImpl() - Constructor for class org.biouno.r.RStep.DescriptorImpl

G

getCommand() - Method in class org.biouno.r.RStep

Returns the set R command to execute

getContents() - Method in class org.biouno.r.R

getDisplayName() - Method in class org.biouno.r.R.DescriptorImpl

getDisplayName() - Method in class org.biouno.r.RStep.DescriptorImpl

getFileExtension() - Method in class org.biouno.r.R

getFunctionName() - Method in class org.biouno.r.RStep.DescriptorImpl

M

Messages - Class in org.biouno.r

Generated localization support class.

Messages() - Constructor for class org.biouno.r.Messages

O

org.biouno.r - package org.biouno.r

R

R - Class in org.biouno.r

Invokes the Rscript interpreter and executes the R script entered on the Jenkins build configuration.

R(String) - Constructor for class org.biouno.r.R

R_DisplayName() - Static method in class org.biouno.r.Messages

Key R.DisplayName: Execute R script.

R_FileCreationError() - Static method in class org.biouno.r.Messages

Key R.FileCreationError: Could not create R script temporary file..

R_FunctionName() - Static method in class org.biouno.r.Messages

Key R.FunctionName: r.

R_NullCommandError() - Static method in class org.biouno.r.Messages

Key R.NullCommandError: R command can not be null..

R.DescriptorImpl - Class in org.biouno.r

RStep - Class in org.biouno.r

Step for workflow/pipeline compatibility.

RStep(String) - Constructor for class org.biouno.r.RStep

RStep.DescriptorImpl - Class in org.biouno.r

T

task() - Method in class org.biouno.r.RStep

_

_R_DisplayName() - Static method in class org.biouno.r.Messages

Key R.DisplayName: Execute R script.

_R_FileCreationError() - Static method in class org.biouno.r.Messages

Key R.FileCreationError: Could not create R script temporary file..

_R_FunctionName() - Static method in class org.biouno.r.Messages

Key R.FunctionName: r.

_R_NullCommandError() - Static method in class org.biouno.r.Messages

Key R.NullCommandError: R command can not be null..

B D G M O R T _
All Classes and Interfaces|All Packages